Unix/Shell

1. Unix Tutorial for Beginners - http://www.ee.surrey.ac.uk/Teaching/Unix/

R

1. Swirl: an R “choose your own adventure” tutorial http://swirlstats.com/students.html Helpful for installing R and RStudio, and learning the basics
2. ggplot2 tutorial
3. Package specific tutorials - you can always google for more:

• dplyr: tutorial and cheatsheet
• ggplot2 cheatsheet
• R markdown: tutorial and cheatsheet
• glmnet: tutorial

Python

1. Enroll in the lab's ROSALIND class here. Doing the problems in order is a great introduction to Python.
2. Python for Biologists is an online book that goes into much more detail than ROSALIND. It's great for new programmers.
3. Data Science in Python tutorial gives a quick overview of useful libraries that you can study in more detail.
4. When you're ready: Advanced Python for Biologists

Github

1. Intro to Git and GitHub

Human Genomics

1. GWAS Workshop
2. Big Bio @ UCLA Tutorials: http://www.big-bio.org/video-tutorials/ This site is a work in progress, but all the topics are relevant to our work. Filling in the worksheets while you watch the videos will help you learn the basics of human genetics/genomics.